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Thanks to this search engine you can search all the departure times and ticket fares of every train line in Japan: shinkansen, limited express trains, rapid trains, local trains, metro/subway trains, for both JR trains and private railway companies trains.
If you want the engine to list more route alternatives, just increase the "Route Outputs" parameter.
Guided tours, activities and other things to do
If you are planning a trip to Japan and you want to do something more than just visiting famous places and monuments, we suggest you to use
Rakuten Travel Experiences.
How to use Rakuten Travel Experiences
Rakuten Travel is a very useful website to
enrich your travel experience, especially if you are going solo or it's your first time in Japan.
Because of the language barrier (and more), in Japan it is very difficult to interact with the locals and to get off the tourist track.
Thanks to Rakuten Travel you can find a lot of interesting and sometimes unique
guided tours and activities all over Japan (and not only in Japan), that you would otherwise never be able to enjoy.
But there's more: on Rakuten Travel you can also
buy tickets for several famous attractions, events, transportation and other useful services for tourists. Last but not least, you can
reserve a table in hundreds of restaurants.
Some examples
Take a look at Rakuten Travel Experiences
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